Detailed information of matrix profile MA0132.2

  1. Home
  2. Matrix > MA0132.2

Profile summary
Name: PDX1
Matrix ID: MA0132.2
Class: Homeo domain factors
Family: HOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585360
Uniprot ID: P52945  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 852 0 7130 7130 0 78 4661 999 ]
C [ 2881 0 0 0 0 185 0 2441 ]
G [ 1216 0 0 0 45 2291 2469 2206 ]
T [ 2181 7130 0 0 7130 4839 292 1483 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0132.1 MA0132 1 Pdx1 Mus musculus
HOX-related factors Homeo domain factors
MA0132.2 MA0132 2 PDX1 Homo sapiens
HOX-related factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0198.1

ChIP-seq Centrality
log(P-value): -6432.81

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0198.1

ChIP-seq Centrality
log(P-value): -7795.89

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: