Detailed information of matrix profile MA0124.2

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Profile summary
Name: Nkx3-1
Matrix ID: MA0124.2
Class: Homeo domain factors
Family: NK-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 18585360
Uniprot ID: P97436  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 2438 981 0 5335 59 0 0 5335 5335 ]
C [ 991 5335 5335 28 5335 1 254 273 1407 ]
G [ 1361 1776 10 10 9 0 0 173 2132 ]
T [ 544 275 336 88 9 5335 5335 523 1509 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0124.1 MA0124 1 NKX3-1 Homo sapiens
NK-related factors Homeo domain factors
MA0124.2 MA0124 2 Nkx3-1 Mus musculus
NK-related factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0078.1

ChIP-seq Centrality
log(P-value): -359.328

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0078.1

ChIP-seq Centrality
log(P-value): -371.166

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: