Detailed information of matrix profile MA0066.1

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Profile summary
Name: PPARG
Matrix ID: MA0066.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: SELEX
Validation: 11139380
Uniprot ID: P37231  
Source:
Comment: -

Sequence logo

Frequency matrix

         
A [ 3 3 19 0 1 0 2 26 5 5 4 1 2 22 1 0 3 22 5 7 ]
C [ 8 0 0 1 0 1 23 1 15 7 2 0 5 5 27 25 12 5 12 0 ]
G [ 14 0 9 27 26 4 3 0 4 10 18 2 20 0 0 0 0 0 6 1 ]
T [ 3 25 0 0 1 23 0 1 4 6 4 25 1 1 0 3 13 1 5 20 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0066.1 MA0066 1 PPARG Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0086.1

ChIP-seq Centrality
log(P-value): -2182.07

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0086.1

ChIP-seq Centrality
log(P-value): -2635.13

TFFM detailed summary logos

Description: peroxisome proliferator-activated receptor gamma

Alias: PPARG1,PPARG2,NR1C3,PPARgamma

Symbol: PPARG

Consensus:

Included Models:

GC Content: