Detailed information of matrix profile MA0048.2

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Profile summary
Name: NHLH1
Matrix ID: MA0048.2
Class: Basic helix-loop-helix factors (bHLH)
Family: Tal-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 8289804
Uniprot ID: Q02575  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 788 461 3 2166 0 96 0 2 296 308 ]
C [ 2166 179 2166 3 301 2166 4 4 2166 736 ]
G [ 181 2166 0 1 2166 124 4 2166 102 2166 ]
T [ 111 142 0 0 114 0 2166 1 350 1489 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0048.1 MA0048 1 NHLH1 Homo sapiens
Tal-related factors Basic helix-loop-helix factors (bHLH)
MA0048.2 MA0048 2 NHLH1 Homo sapiens
Tal-related factors Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

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GC Content: