Detailed information of matrix profile MA0002.2

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Profile summary
Name: RUNX1
Matrix ID: MA0002.2
Class: Runt domain factors
Family: Runt-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation:
Uniprot ID: Q01196  
Source:
Comment: Data is from Frank Grosveld's Lab.

Sequence logo

Frequency matrix

         
A [ 287 234 123 57 0 87 0 17 10 131 500 ]
C [ 496 485 1072 0 75 127 0 42 400 463 158 ]
G [ 696 467 149 7 1872 70 1987 1848 251 81 289 ]
T [ 521 814 656 1936 53 1716 13 93 1339 1325 1053 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0002.1 MA0002 1 RUNX1 Homo sapiens
Runt-related factors Runt domain factors
MA0002.2 MA0002 2 RUNX1 Mus musculus
Runt-related factors Runt domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0091.1

ChIP-seq Centrality
log(P-value): -1042.13

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0091.1

ChIP-seq Centrality
log(P-value): -1004.13

TFFM detailed summary logos

Description: runt-related transcription factor 1

Alias: PEBP2A2,AMLCR1

Symbol: RUNX1

Consensus:

Included Models:

GC Content: