JASPAR Collection PHYLOFACTS

  1. Home
  2. Collection phylofacts

Total 174 profiles

Display profiles
ID Name JASPAR TRANSFAC Sequence logo
PF0001.1 RCGCANGCGY - NRF-1
PF0002.1 CACGTG - MYC
PF0003.1 SCGGAAGY ELK4 ELK-1
PF0004.1 ACTAYRNNNCCCR - -
PF0005.1 GATTGGY NF-Y NF-Y
PF0006.1 GGGCGGR SP1 SP1
PF0007.1 TGANTCA Fos AP-1
PF0008.1 TMTCGCGANR - -
PF0009.1 TGAYRTCA - ATF3
PF0010.1 GCCATNTTG - YY1
PF0011.1 MGGAAGTG GABPA GABP
PF0012.1 CAGGTG ESR1 E12
PF0013.1 CTTTGT - LEF1
PF0014.1 TGACGTCA - ATF3
PF0015.1 CAGCTG NHLH1 AP-4
PF0016.1 RYTTCCTG - C-ETS-2
PF0017.1 AACTTT NR2F1 IRF1(*)
PF0018.1 TCANNTGAY - SREBP-1
PF0019.1 GKCGCNNNNNNNTGAYG - -
PF0020.1 GTGACGY CREB1 E4F1
PF0021.1 GGAANCGGAANY - -
PF0022.1 TGCGCANK - -
PF0023.1 TAATTA TCF1 CHX10
PF0024.1 GGGAGGRR - MAZ
PF0025.1 TGACCTY - ESRRA
Showing 25 profiles of page 1 from 7 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.