JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0701.1 LHX9 Homo sapiens Homeo domain factors HD-LIM factors
MA0702.1 LMX1A Homo sapiens Homeo domain factors HD-LIM factors
MA0703.1 LMX1B Homo sapiens Homeo domain factors HD-LIM factors
MA0704.1 Lhx4 Mus musculus Homeo domain factors HD-LIM factors
MA0705.1 Lhx8 Mus musculus Homeo domain factors HD-LIM factors
MA0706.1 MEOX2 Homo sapiens Homeo domain factors HOX-related factors
MA0707.1 MNX1 Homo sapiens Homeo domain factors HOX-related factors
MA0708.1 MSX2 Homo sapiens Homeo domain factors NK-related factors
MA0709.1 Msx3 Mus musculus Homeo domain factors NK-related factors
MA0710.1 NOTO Homo sapiens Homeo domain factors NK-related factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.