JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0692.1 TFEB Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP factors
MA0693.1 Vdr Mus musculus Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA0693.2 VDR Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA0694.1 ZBTB7B Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0695.1 ZBTB7C Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0696.1 ZIC1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0697.1 ZIC3 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0698.1 ZBTB18 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0699.1 LBX2 Homo sapiens Homeo domain factors NK-related factors
MA0700.1 LHX2 Homo sapiens Homeo domain factors HD-LIM factors
Showing 10 profiles of page 84 from 157 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.