JASPAR CORE

  1. Home
  2. Collection core

Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0672.1 NKX2-3 Homo sapiens Homeo domain factors NK-related factors
MA0673.1 NKX2-8 Homo sapiens Homeo domain factors NK-related factors
MA0674.1 NKX6-1 Homo sapiens Homeo domain factors NK-related factors
MA0675.1 NKX6-2 Homo sapiens Homeo domain factors NK-related factors
MA0676.1 Nr2e1 Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0677.1 Nr2f6 Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0678.1 OLIG2 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related factors
MA0679.1 ONECUT1 Homo sapiens Homeo domain factors HD-CUT factors
MA0680.1 PAX7 Homo sapiens Paired box factors Paired plus homeo domain
MA0681.1 Phox2b Mus musculus Homeo domain factors Paired-related HD factors
Showing 10 profiles of page 82 from 157 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.