JASPAR CORE

  1. Home
  2. Collection core

Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0613.1 FOXG1 Homo sapiens Fork head / winged helix factors Forkhead box (FOX) factors
MA0614.1 Foxj2 Mus musculus Fork head / winged helix factors Forkhead box (FOX) factors
MA0615.1 Gmeb1 Mus musculus SAND domain factors GMEB
MA0616.1 Hes2 Mus musculus Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA0617.1 Id2 Mus musculus Basic helix-loop-helix factors (bHLH) HLH domain only
MA0618.1 LBX1 Homo sapiens Homeo domain factors NK-related factors
MA0619.1 LIN54 Gallus gallus CRC domain
MA0620.1 Mitf Mus musculus Basic helix-loop-helix factors (bHLH) bHLH-ZIP factors
MA0620.2 MITF Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP factors
MA0621.1 mix-a Xenopus laevis Homeo domain factors Paired-related HD factors
Showing 10 profiles of page 76 from 157 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.