JASPAR CORE

  1. Home
  2. Collection core

Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0556.1 AP3 Arabidopsis thaliana MADS box factors
MA0557.1 FHY3 Arabidopsis thaliana SWIM-type zinc finger
MA0558.1 FLC Arabidopsis thaliana MADS box factors
MA0559.1 PI Arabidopsis thaliana MADS box factors
MA0560.1 PIF3 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0561.1 PIF4 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0562.1 PIF5 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0563.1 SEP3 Arabidopsis thaliana MADS box factors
MA0564.1 ABI3 Arabidopsis thaliana B3 domain
MA0565.1 FUS3 Arabidopsis thaliana B3 domain
Showing 10 profiles of page 70 from 157 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.