JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1158.1 MGP Arabidopsis thaliana C2H2
MA1159.1 SGR5 Arabidopsis thaliana C2H2
MA1160.1 AT1G14580 Arabidopsis thaliana C2H2
MA1161.1 TSO1 Arabidopsis thaliana Other CPP
MA1162.1 TCX2 Arabidopsis thaliana Other CPP
MA1163.1 AT5G45580 Arabidopsis thaliana Other G2like
MA1164.1 AT4G37180 Arabidopsis thaliana Other G2like
MA1165.1 AT1G49560 Arabidopsis thaliana Other G2like
MA1166.1 AT3G12730 Arabidopsis thaliana Other G2like
MA1167.1 AT2G03500 Arabidopsis thaliana Other G2like
MA1168.1 AT3G04030 Arabidopsis thaliana Other G2like
MA1169.1 MYB105 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1170.1 MYB118 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1171.1 MYB52 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1172.1 MYB3R5 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1173.1 MYB101 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1174.1 MYB56 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1175.1 MYB81 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1176.1 MYB119 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1177.1 MYB65 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1178.1 MYB3R1 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1179.1 MYB1 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1180.1 MYB3R4 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1181.1 MYB113 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1182.1 At3g09600 Arabidopsis thaliana Helix-Turn-Helix Myb-related
Showing 25 profiles of page 53 from 63 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.