JASPAR CORE

  1. Home
  2. Collection core

Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0306.1 GIS1 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0307.1 GLN3 Saccharomyces cerevisiae Other C4 zinc finger-type factors GATA-type zinc fingers
MA0308.1 GSM1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0309.1 GZF3 Saccharomyces cerevisiae Other C4 zinc finger-type factors GATA-type zinc fingers
MA0310.1 HAC1 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0311.1 HAL9 Saccharomyces cerevisiae C6 zinc cluster factors
MA0312.1 HAP1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0313.1 HAP2 Saccharomyces cerevisiae Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding factors
MA0314.1 HAP3 Saccharomyces cerevisiae Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding factors
MA0316.1 HAP5 Saccharomyces cerevisiae Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding factors
Showing 10 profiles of page 43 from 157 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.