JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0229.1 inv Drosophila melanogaster Homeo domain factors NK-related factors
MA0230.1 lab Drosophila melanogaster Homeo domain factors HOX-related factors
MA0231.1 lbe Drosophila melanogaster Homeo domain factors
MA0232.1 lbl Drosophila melanogaster Homeo domain factors
MA0233.1 mirr Drosophila melanogaster Homeo domain factors
MA0234.1 oc Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0235.1 onecut Drosophila melanogaster Homeo domain factors HD-CUT factors
MA0236.1 otp Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0237.1 pan Drosophila melanogaster High-mobility group (HMG) domain factors High Mobility Group box (HMG)
MA0237.2 pan Drosophila melanogaster High-mobility group (HMG) domain factors
Showing 10 profiles of page 35 from 157 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.