JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0209.1 ap Drosophila melanogaster Homeo domain factors
MA0210.1 ara Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0211.1 bap Drosophila melanogaster Homeo domain factors NK-related factors
MA0212.1 bcd Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0213.1 brk Drosophila melanogaster
MA0214.1 bsh Drosophila melanogaster Homeo domain factors NK-related factors
MA0215.1 btn Drosophila melanogaster Homeo domain factors
MA0216.1 cad Drosophila melanogaster Homeo domain factors HOX-related factors
MA0216.2 cad Drosophila melanogaster Homeo domain factors HOX-related factors
MA0217.1 caup Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.