JASPAR CORE

  1. Home
  2. Collection core

Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1358.1 bHLH130 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1359.1 bHLH31 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1360.1 bHLH74 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1361.1 bHLH18 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1362.1 bHLH77 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1363.1 bHLH69 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1364.1 PIF7 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1365.1 AT5G47660 Arabidopsis thaliana Helix-Turn-Helix Trihelix
MA1366.1 AT1G76880 Arabidopsis thaliana Helix-Turn-Helix Trihelix
MA1367.1 AT1G76870 Arabidopsis thaliana Helix-Turn-Helix Trihelix
MA1368.1 AT3G25990 Arabidopsis thaliana Helix-Turn-Helix Trihelix
MA1369.1 HDG1 Arabidopsis thaliana Homeo domain factors
MA1370.1 IDD5 Arabidopsis thaliana C2H2 zinc finger factors
MA1371.1 IDD4 Arabidopsis thaliana C2H2 zinc finger factors
MA1372.1 STZ Arabidopsis thaliana C2H2 zinc finger factors
MA1373.1 IDD2 Arabidopsis thaliana C2H2 zinc finger factors
MA1374.1 IDD7 Arabidopsis thaliana C2H2 zinc finger factors
MA1375.1 ANL2 Arabidopsis thaliana Homeo domain factors HD-ZIP factors
MA1376.1 DEAR3 Arabidopsis thaliana AP2/ERF domain
MA1377.1 PLT1 Arabidopsis thaliana AP2/ERF domain
MA1378.1 PLT3 Arabidopsis thaliana AP2/ERF domain
MA1379.1 SOL1 Arabidopsis thaliana Other CPP
MA1380.1 AT2G20110 Arabidopsis thaliana Other CPP
MA1381.1 AT3G46070 Arabidopsis thaliana C2H2 zinc finger factors
MA1382.1 FAR1 Arabidopsis thaliana Zinc-coordinating C3H Zinc Figer
MA1383.1 KAN2 Arabidopsis thaliana Other G2-like
MA1384.1 AT2G01060 Arabidopsis thaliana Other G2-like
MA1385.1 AT2G40260 Arabidopsis thaliana Other G2-like
MA1386.1 AT1G25550 Arabidopsis thaliana Other G2-like
MA1387.1 AT1G13300 Arabidopsis thaliana Other G2-like
MA1388.1 AT3G24120 Arabidopsis thaliana Other G2-like
MA1389.1 AT5G29000 Arabidopsis thaliana Other G2-like
MA1390.1 AT1G68670 Arabidopsis thaliana Other G2-like
MA1391.1 MYB33 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1392.1 MYB98 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1393.1 MYB70 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1394.1 MYB73 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1395.1 MYB77 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1396.1 GATA6 Arabidopsis thaliana Other C4 zinc finger-type factors GATA-type zinc fingers
MA1397.1 At1g74840 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1398.1 At5g47390 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1399.1 At5g08520 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1400.1 At1g19000 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1401.1 EPR1 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1402.1 BPC6 Arabidopsis thaliana Other BBR-BPC
MA1403.1 BPC5 Arabidopsis thaliana Other BBR-BPC
MA1404.1 BPC1 Arabidopsis thaliana Other BBR-BPC
MA1405.1 SIZF2 Solanum lycopersicum C2H2 zinc finger factors
MA1406.1 ATHB4 Arabidopsis thaliana Homeo domain factors HD-ZIP factors
MA1407.1 bZIP14 Phaeodactylum tricornutum Basic leucine zipper factors (bZIP)
Showing 50 profiles of page 31 from 32 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.