JASPAR CORE

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Total 1564 profiles

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ID Name Species Class Family Sequence logo
MA0190.1 Gsc Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0191.1 HGTX Drosophila melanogaster Homeo domain factors NK-related factors
MA0192.1 Hmx Drosophila melanogaster Homeo domain factors NK-related factors
MA0193.1 schlank Drosophila melanogaster Homeo domain factors
MA0194.1 Lim1 Drosophila melanogaster Homeo domain factors HD-LIM factors
MA0195.1 Lim3 Drosophila melanogaster Homeo domain factors HD-LIM factors
MA0196.1 NK7.1 Drosophila melanogaster Homeo domain factors NK-related factors
MA0197.1 nub Drosophila melanogaster Homeo domain factors POU domain factors
MA0197.2 nub Drosophila melanogaster Homeo domain factors POU domain factors
MA0198.1 OdsH Drosophila melanogaster Homeo domain factors Paired-related HD factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.