JASPAR CORE

  1. Home
  2. Collection core

Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0155.1 INSM1 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0156.1 FEV Homo sapiens Rattus norvegicus Tryptophan cluster factors Ets-related factors
MA0156.2 FEV Homo sapiens Tryptophan cluster factors Ets-related factors
MA0157.1 FOXO3 Homo sapiens Mus musculus Fork head / winged helix factors Forkhead box (FOX) factors
MA0157.2 FOXO3 Homo sapiens Fork head / winged helix factors Forkhead box (FOX) factors
MA0158.1 HOXA5 Homo sapiens Mus musculus Homeo domain factors HOX-related factors
MA0159.1 RARA::RXRA Homo sapiens Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
MA0160.1 NR4A2 Homo sapiens Mus musculus Rattus norvegicus Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA0161.1 NFIC Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
MA0161.2 NFIC Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
Showing 10 profiles of page 27 from 157 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.