JASPAR CORE

Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0711.1 OTX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0712.1 OTX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0713.1 PHOX2A Homo sapiens Homeo domain factors Paired-related HD factors
MA0714.1 PITX3 Homo sapiens Homeo domain factors Paired-related HD factors
MA0715.1 PROP1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0716.1 PRRX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0717.1 RAX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0718.1 RAX Homo sapiens Homeo domain factors Paired-related HD factors
MA0719.1 RHOXF1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0720.1 Shox2 Mus musculus Homeo domain factors Paired-related HD factors
MA0721.1 UNCX Homo sapiens Homeo domain factors Paired-related HD factors
MA0722.1 VAX1 Homo sapiens Homeo domain factors NK-related factors
MA0723.1 VAX2 Homo sapiens Homeo domain factors NK-related factors
MA0724.1 VENTX Homo sapiens Homeo domain factors NK-related factors
MA0725.1 VSX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0726.1 VSX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0727.1 NR3C2 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0728.1 Nr2f6(var.2) Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0729.1 RARA Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA0730.1 RARA(var.2) Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA0731.1 BCL6B Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0732.1 EGR3 Homo sapiens C2H2 zinc finger factors Three-zinc finger Krüppel-related factors
MA0733.1 EGR4 Homo sapiens C2H2 zinc finger factors Three-zinc finger Krüppel-related factors
MA0734.1 GLI2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0735.1 GLIS1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0736.1 GLIS2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0737.1 GLIS3 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0738.1 HIC2 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0739.1 Hic1 Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0740.1 KLF14 Homo sapiens C2H2 zinc finger factors Three-zinc finger Krüppel-related factors
MA0741.1 KLF16 Homo sapiens C2H2 zinc finger factors Three-zinc finger Krüppel-related factors
MA0742.1 Klf12 Mus musculus C2H2 zinc finger factors Three-zinc finger Krüppel-related factors
MA0743.1 SCRT1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0744.1 SCRT2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0745.1 SNAI2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0746.1 SP3 Homo sapiens C2H2 zinc finger factors Three-zinc finger Krüppel-related factors
MA0747.1 SP8 Homo sapiens C2H2 zinc finger factors Three-zinc finger Krüppel-related factors
MA0748.1 YY2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0749.1 ZBED1 Homo sapiens C2H2 zinc finger factors BED zinc finger factors
MA0750.1 ZBTB7A Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0750.2 ZBTB7A Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0751.1 ZIC4 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0752.1 ZNF410 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0753.1 ZNF740 Homo sapiens C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0754.1 CUX1 Homo sapiens Homeo domain factors HD-CUT factors
MA0755.1 CUX2 Homo sapiens Homeo domain factors HD-CUT factors
MA0756.1 ONECUT2 Homo sapiens Homeo domain factors HD-CUT factors
MA0757.1 ONECUT3 Homo sapiens Homeo domain factors HD-CUT factors
MA0758.1 E2F7 Homo sapiens Fork head / winged helix factors E2F-related factors
MA0759.1 ELK3 Homo sapiens Tryptophan cluster factors Ets-related factors
Showing 50 profiles of page 18 from 32 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.