JASPAR CORE

Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1408.1 FaEOBII Fragaria x ananassa Helix-Turn-Helix Myb-related
MA1409.1 OsRR22 Oryza sativa Other ARR
MA1410.1 StBRC1 Solanum lycopersicum Basic helix-loop-helix factors (bHLH) TCP domain
MA1411.1 TSAR1 Medicago truncatula Basic helix-loop-helix factors (bHLH)
MA1412.1 TSAR2 Medicago truncatula Basic helix-loop-helix factors (bHLH)
MA1413.1 UIF1 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1414.1 E2FA Arabidopsis thaliana Winged Helix-Turn-Helix E2F
MA1415.1 REF6 Arabidopsis thaliana C2H2 zinc finger factors
MA1416.1 RAMOSA1 Zea mays C2H2 zinc finger factors
MA1417.1 O2 Zea mays Basic leucine zipper factors (bZIP)
Showing 10 profiles of page 156 from 157 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.