JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1398.1 At5g47390 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1399.1 At5g08520 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1400.1 At1g19000 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1401.1 EPR1 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1402.1 BPC6 Arabidopsis thaliana Other BBR-BPC
MA1403.1 BPC5 Arabidopsis thaliana Other BBR-BPC
MA1404.1 BPC1 Arabidopsis thaliana Other BBR-BPC
MA1405.1 SIZF2 Solanum lycopersicum C2H2 zinc finger factors
MA1406.1 ATHB4 Arabidopsis thaliana Homeo domain factors HD-ZIP factors
MA1407.1 bZIP14 Phaeodactylum tricornutum Basic leucine zipper factors (bZIP)
Showing 10 profiles of page 155 from 157 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.