JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1388.1 AT3G24120 Arabidopsis thaliana Other G2-like
MA1389.1 AT5G29000 Arabidopsis thaliana Other G2-like
MA1390.1 AT1G68670 Arabidopsis thaliana Other G2-like
MA1391.1 MYB33 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1392.1 MYB98 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1393.1 MYB70 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1394.1 MYB73 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1395.1 MYB77 Arabidopsis thaliana Helix-Turn-Helix Myb
MA1396.1 GATA6 Arabidopsis thaliana Other C4 zinc finger-type factors GATA-type zinc fingers
MA1397.1 At1g74840 Arabidopsis thaliana Helix-Turn-Helix Myb-related
Showing 10 profiles of page 154 from 157 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.