JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1378.1 PLT3 Arabidopsis thaliana AP2/ERF domain
MA1379.1 SOL1 Arabidopsis thaliana Other CPP
MA1380.1 AT2G20110 Arabidopsis thaliana Other CPP
MA1381.1 AT3G46070 Arabidopsis thaliana C2H2 zinc finger factors
MA1382.1 FAR1 Arabidopsis thaliana Zinc-coordinating C3H Zinc Figer
MA1383.1 KAN2 Arabidopsis thaliana Other G2-like
MA1384.1 AT2G01060 Arabidopsis thaliana Other G2-like
MA1385.1 AT2G40260 Arabidopsis thaliana Other G2-like
MA1386.1 AT1G25550 Arabidopsis thaliana Other G2-like
MA1387.1 AT1G13300 Arabidopsis thaliana Other G2-like
Showing 10 profiles of page 153 from 157 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.