JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1368.1 AT3G25990 Arabidopsis thaliana Helix-Turn-Helix Trihelix
MA1369.1 HDG1 Arabidopsis thaliana Homeo domain factors
MA1370.1 IDD5 Arabidopsis thaliana C2H2 zinc finger factors
MA1371.1 IDD4 Arabidopsis thaliana C2H2 zinc finger factors
MA1372.1 STZ Arabidopsis thaliana C2H2 zinc finger factors
MA1373.1 IDD2 Arabidopsis thaliana C2H2 zinc finger factors
MA1374.1 IDD7 Arabidopsis thaliana C2H2 zinc finger factors
MA1375.1 ANL2 Arabidopsis thaliana Homeo domain factors HD-ZIP factors
MA1376.1 DEAR3 Arabidopsis thaliana AP2/ERF domain
MA1377.1 PLT1 Arabidopsis thaliana AP2/ERF domain
Showing 10 profiles of page 152 from 157 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.