JASPAR CORE

  1. Home
  2. Collection core

Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1348.1 TGA9 Arabidopsis thaliana Basic leucine zipper factors (bZIP)
MA1349.1 bZIP16 Arabidopsis thaliana Basic leucine zipper factors (bZIP)
MA1350.1 bZIP42 Arabidopsis thaliana Basic leucine zipper factors (bZIP)
MA1351.1 GBF3 Arabidopsis thaliana Basic leucine zipper factors (bZIP)
MA1352.1 TRP1 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1353.1 AT1G72740 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1354.1 AT4G12670 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1355.1 TBP3 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1356.1 TRP2 Arabidopsis thaliana Helix-Turn-Helix Myb-related
MA1357.1 bHLH80 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
Showing 10 profiles of page 150 from 157 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.