JASPAR CORE

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Total 1564 profiles

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ID Name Species Class Family Sequence logo
MA1288.1 At1g72010 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1289.1 TCP3 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1290.1 TCP17 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1291.1 TCP7 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1292.1 MYB27 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1293.1 MYB57 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1294.1 MYB62 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP domain
MA1295.1 WRKY20 Arabidopsis thaliana WRKY
MA1296.1 WRKY46 Arabidopsis thaliana WRKY
MA1297.1 WRKY26 Arabidopsis thaliana WRKY
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



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Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.