JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1258.1 DREB2 Arabidopsis thaliana AP2/ERF domain
MA1259.1 AT1G01250 Arabidopsis thaliana AP2/ERF domain
MA1260.1 AT1G77640 Arabidopsis thaliana AP2/ERF domain
MA1261.1 AT5G67000 Arabidopsis thaliana AP2/ERF domain
MA1262.1 ERF2 Arabidopsis thaliana AP2/ERF domain
MA1263.1 AT1G36060 Arabidopsis thaliana AP2/ERF domain
MA1264.1 ESE1 Arabidopsis thaliana AP2/ERF domain
MA1265.1 AT4G31060 Arabidopsis thaliana AP2/ERF domain
MA1266.1 RAP211 Arabidopsis thaliana AP2/ERF domain
MA1267.1 AT5G66940 Arabidopsis thaliana C2H2 zinc finger factors Dof-type
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.