JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1248.1 DREB26 Arabidopsis thaliana AP2/ERF domain
MA1249.1 RAP210 Arabidopsis thaliana AP2/ERF domain
MA1250.1 AT1G75490 Arabidopsis thaliana AP2/ERF domain
MA1251.1 DEAR5 Arabidopsis thaliana AP2/ERF domain
MA1252.1 PUCHI Arabidopsis thaliana AP2/ERF domain
MA1253.1 AT3G16280 Arabidopsis thaliana AP2/ERF domain
MA1254.1 ERF13 Arabidopsis thaliana AP2/ERF domain
MA1255.1 AT1G22810 Arabidopsis thaliana AP2/ERF domain
MA1256.1 RAP212 Arabidopsis thaliana AP2/ERF domain
MA1257.1 ERF9 Arabidopsis thaliana AP2/ERF domain
Showing 10 profiles of page 140 from 157 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.