JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1228.1 AT4G18450 Arabidopsis thaliana AP2/ERF domain
MA1229.1 AT2G44940 Arabidopsis thaliana AP2/ERF domain
MA1230.1 AT1G77200 Arabidopsis thaliana AP2/ERF domain
MA1231.1 ERF15 Arabidopsis thaliana AP2/ERF domain
MA1232.1 AT4G28140 Arabidopsis thaliana AP2/ERF domain
MA1233.1 AT1G71450 Arabidopsis thaliana AP2/ERF domain
MA1234.1 AT1G19210 Arabidopsis thaliana AP2/ERF domain
MA1235.1 AIL7 Arabidopsis thaliana AP2/ERF domain
MA1236.1 ESE3 Arabidopsis thaliana AP2/ERF domain
MA1237.1 AT4G16750 Arabidopsis thaliana AP2/ERF domain
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.