JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1218.1 CBF4 Arabidopsis thaliana AP2/ERF domain
MA1219.1 CEJ1 Arabidopsis thaliana AP2/ERF domain
MA1220.1 TINY Arabidopsis thaliana AP2/ERF domain
MA1221.1 RAP26 Arabidopsis thaliana AP2/ERF domain
MA1222.1 AT1G44830 Arabidopsis thaliana AP2/ERF domain
MA1223.1 AT3G60490 Arabidopsis thaliana AP2/ERF domain
MA1224.1 CBF1 Arabidopsis thaliana AP2/ERF domain
MA1225.1 ERF5 Arabidopsis thaliana AP2/ERF domain
MA1226.1 AT5G18450 Arabidopsis thaliana AP2/ERF domain
MA1227.1 AT1G12630 Arabidopsis thaliana AP2/ERF domain
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.