JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1208.1 GT2 Arabidopsis thaliana Helix-Turn-Helix Trihelix
MA1209.1 ATHB20 Arabidopsis thaliana Homeo domain factors
MA1210.1 HAT22 Arabidopsis thaliana Homeo domain factors
MA1211.1 ATHB18 Arabidopsis thaliana Homeo domain factors
MA1212.1 ATHB13 Arabidopsis thaliana Homeo domain factors
MA1213.1 ATHB21 Arabidopsis thaliana Homeo domain factors HD-ZIP factors
MA1214.1 ATHB40 Arabidopsis thaliana Homeo domain factors HD-ZIP factors
MA1215.1 ATHB53 Arabidopsis thaliana Homeo domain factors HD-ZIP factors
MA1216.1 RAP21 Arabidopsis thaliana AP2/ERF domain
MA1217.1 CBF2 Arabidopsis thaliana AP2/ERF domain
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.