JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1198.1 HAT2 Arabidopsis thaliana Homeo domain factors
MA1199.1 AGL16 Arabidopsis thaliana MADS box factors
MA1200.1 AGL25 Arabidopsis thaliana MADS box factors
MA1201.1 AGL42 Arabidopsis thaliana MADS box factors
MA1202.1 AGL55 Arabidopsis thaliana MADS box factors
MA1203.1 AGL63 Arabidopsis thaliana MADS box factors
MA1204.1 AGL13 Arabidopsis thaliana MADS box factors
MA1205.1 AGL6 Arabidopsis thaliana MADS box factors
MA1206.1 ARF2 Arabidopsis thaliana B3 domain
MA1207.1 GT3a Arabidopsis thaliana Helix-Turn-Helix Trihelix
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.