JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1158.1 MGP Arabidopsis thaliana C2H2
MA1159.1 SGR5 Arabidopsis thaliana C2H2
MA1160.1 AT1G14580 Arabidopsis thaliana C2H2
MA1161.1 TSO1 Arabidopsis thaliana Other CPP
MA1162.1 TCX2 Arabidopsis thaliana Other CPP
MA1163.1 AT5G45580 Arabidopsis thaliana Other G2like
MA1164.1 AT4G37180 Arabidopsis thaliana Other G2like
MA1165.1 AT1G49560 Arabidopsis thaliana Other G2like
MA1166.1 AT3G12730 Arabidopsis thaliana Other G2like
MA1167.1 AT2G03500 Arabidopsis thaliana Other G2like
Showing 10 profiles of page 131 from 157 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.