JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1088.1 WRKY48 Arabidopsis thaliana WRKY
MA1089.1 WRKY57 Arabidopsis thaliana WRKY
MA1090.1 WRKY60 Arabidopsis thaliana WRKY
MA1091.1 WRKY62 Arabidopsis thaliana WRKY
MA1092.1 WRKY63 Arabidopsis thaliana WRKY
MA1093.1 WRKY75 Arabidopsis thaliana WRKY
MA1094.1 WRKY8 Arabidopsis thaliana WRKY
MA1095.1 ARALYDRAFT_495258 Arabidopsis lyrata subsp. lyrata Basic helix-loop-helix factors (bHLH) TCP domain
MA1096.1 ARALYDRAFT_496250 Arabidopsis lyrata subsp. lyrata Basic helix-loop-helix factors (bHLH) TCP domain
MA1097.1 ARALYDRAFT_493022 Arabidopsis lyrata subsp. lyrata Basic helix-loop-helix factors (bHLH) TCP domain
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.