JASPAR Collection PBM

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Total 208 profiles

Display profiles
ID Name Species Class Family Sequence logo
PB0201.1 Zfp281_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0202.1 Zfp410_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0203.1 Zfp691_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0204.1 Zfp740_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0205.1 Zic1_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0206.1 Zic2_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0207.1 Zic3_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0208.1 Zscan4_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
Showing 8 profiles of page 21 from 21 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.