JASPAR: An open-access database of transcription factor binding profiles

	ID	Name	Included models	Sequence logo
	MF0011.1	HMG class	MA0044 MA0045 MA0077 MA0078 MA0084 MA0087

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Input a (FASTA-formatted) sequence to scan with selected matrix models.

Enter FASTA sequence here: (3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.

Column comparison metric

Alignment method

Tree-building method

Multiple alignment method

You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.

No. of matrices

Matrix format

Create models with permuted columns from selected models.

Type

Matrix format

Download the PFMs of the model(s) selected in four different formats.

Download type

Matrix format

JASPAR Collection FAM