JASPAR CORE

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Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0426.1 YHP1 Saccharomyces cerevisiae Homeo domain factors
MA0428.1 YKL222C Saccharomyces cerevisiae C6 zinc cluster factors
MA0429.1 YLL054C Saccharomyces cerevisiae C6 zinc cluster factors
MA0430.1 YLR278C Saccharomyces cerevisiae C6 zinc cluster factors
MA0431.1 TDA9 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0432.1 YNR063W Saccharomyces cerevisiae C6 zinc cluster factors
MA0433.1 YOX1 Saccharomyces cerevisiae Homeo domain factors
MA0434.1 YPR013C Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0435.1 YPR015C Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0436.1 YPR022C Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
Showing 10 profiles of page 55 from 157 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.