Detailed information of matrix profile MA0866.1

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Profile summary
Name: SOX21
Matrix ID: MA0866.1
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 12920151
Uniprot ID: Q9Y651  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 15806 15806 15 15806 15806 6 348 1909 128 15806 64 84 10 33 279 ]
C [ 83 250 15806 7 13 3 15 1271 7221 20 9 15 4 17 790 ]
G [ 199 2008 28 22 56 30 9624 7901 73 40 10733 77 15806 37 484 ]
T [ 106 232 24 1 0 15806 5819 4725 8384 1 5073 15806 8 15806 15806 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0866.1 MA0866 1 SOX21 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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