Detailed information of matrix profile MA0854.1

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Profile summary
Name: Alx1
Matrix ID: MA0854.1
Class: Homeo domain factors
Family: Paired-related HD factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 23332764
Uniprot ID: Q8C8B0  
Source:
Comment: Data is from Uniprobe database. Promoted from JASPAR PH0010.1 based on new evidence from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 19 7 38 43 5 1 98 98 1 0 92 53 15 23 39 24 15 ]
C [ 44 21 33 9 40 7 0 0 1 1 0 2 21 32 31 29 40 ]
G [ 17 65 14 31 2 0 1 1 0 0 7 40 11 16 12 23 14 ]
T [ 20 7 15 17 53 92 0 1 98 98 1 5 53 29 17 24 31 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0854.1 MA0854 1 Alx1 Mus musculus
Paired-related HD factors Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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GC Content: