Detailed information of matrix profile MA0729.1

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Profile summary
Name: RARA
Matrix ID: MA0729.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 15019979
Uniprot ID: P10276  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 250 507 0 1 0 2 528 526 526 522 0 0 3 0 540 539 2 0 ]
C [ 1 1 0 0 5 707 0 0 0 5 0 0 0 705 0 36 0 115 ]
G [ 513 35 745 746 1 26 4 28 3 4 759 754 0 0 1 30 228 226 ]
T [ 4 0 0 19 559 0 0 162 37 0 1 101 546 2 0 181 328 212 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0729.1 MA0729 1 RARA Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

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GC Content: