Detailed information of matrix profile MA0621.1

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Profile summary
Name: mix-a
Matrix ID: MA0621.1
Class: Homeo domain factors
Family: Paired-related HD factors
Collection: CORE
Taxon: Vertebrates
Species: Xenopus laevis
Data Type: PBM
Validation: 23332764
Uniprot ID: P21711  
Pazar TF:
TFBSshape ID:
TFencyclopedia IDs:
Source:
Comment: Data is from Weirauch PBM (2014)

Sequence logo

Frequency matrix

         
A [ 312 345 130 0 1000 1000 0 0 938 228 205 ]
C [ 229 150 146 0 0 0 0 0 21 100 205 ]
G [ 229 261 46 0 0 0 0 0 21 488 290 ]
T [ 229 244 679 1000 0 0 1000 1000 21 184 301 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

No TFBSshape profile for this model.

External links

         
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0621.1 MA0621 1 mix-a Xenopus laevis
Paired-related HD factors Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: