Detailed information of matrix profile MA0143.2

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Profile summary
Name: Sox2
Matrix ID: MA0143.2
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 18555785
Uniprot ID: P48432  
Pazar TF: TF0000779
TFBSshape ID: 136
TFencyclopedia IDs: 136
Source: ChIP-seq
Comment: -

Sequence logo

Frequency matrix

         
A [ 27 20 329 2 14 36 85 63 407 26 26 31 426 367 485 ]
C [ 446 454 6 10 0 83 4 195 125 37 77 423 42 67 60 ]
G [ 89 22 3 6 6 531 8 76 38 26 445 84 37 156 59 ]
T [ 107 173 331 651 649 19 571 334 96 577 117 127 159 74 58 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

External links

                   
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0143.1 MA0143 1 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0143.2 MA0143 2 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0143.3 MA0143 3 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
     

log(P-value) = 531

TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol: 18555785

Consensus:

Included Models:

GC Content: