Detailed information of matrix profile MA0143.1

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Profile summary
Name: Sox2
Matrix ID: MA0143.1
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 18555785
Uniprot ID: P48432  
Pazar TF: TF0000779
TFBSshape ID:
TFencyclopedia IDs: 531
Source:
Comment: -

Sequence logo

Frequency matrix

         
A [ 58 74 161 127 117 575 96 333 570 19 648 650 331 174 107 ]
C [ 61 157 36 84 444 26 38 77 9 529 6 7 4 22 89 ]
G [ 60 67 41 422 77 39 124 194 4 83 1 10 7 453 444 ]
T [ 485 366 426 32 27 26 408 64 85 38 14 2 327 20 27 ]

Binding sites information

   

TFBS profiles

No TFBSshape profile for this model.

External links

                   
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0143.1 MA0143 1 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0143.2 MA0143 2 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0143.3 MA0143 3 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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Symbol:

Consensus:

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GC Content: