Detailed information of matrix profile MA1287.1

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Profile summary
Name: At5g08330
Matrix ID: MA1287.1
Class: Basic helix-loop-helix factors (bHLH)
Family: TCP domain
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 21241251
Uniprot ID: Q9FTA2  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 237 177 137 49 107 1 1 122 23 0 0 578 0 234 ]
C [ 96 118 65 88 14 0 0 33 520 598 598 0 558 99 ]
G [ 104 150 338 37 415 582 597 289 1 0 0 20 5 77 ]
T [ 161 153 58 424 62 15 0 154 54 0 0 0 35 188 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1287.1 MA1287 1 At5g08330 Arabidopsis thaliana
TCP domain Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0273.1

ChIP-seq Centrality
log(P-value): -9349.45

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0273.1

ChIP-seq Centrality
log(P-value): -9397.47

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: