Detailed information of matrix profile MA0815.1

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Profile summary
Name: TFAP2C(var.3)
Matrix ID: MA0815.1
Class: Basic helix-span-helix factors (bHSH)
Family: AP-2
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 16420676
Uniprot ID: Q92754  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 435 0 0 0 20 73 425 1217 330 0 0 0 1466 ]
C [ 343 519 3137 3082 2359 984 924 404 95 0 0 2379 215 ]
G [ 174 2128 0 0 110 362 913 1001 2073 2408 2496 659 350 ]
T [ 1282 0 0 0 380 1013 365 89 17 0 0 0 532 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0815.1 MA0815 1 TFAP2C(var.3) Homo sapiens
AP-2 Basic helix-span-helix factors (bHSH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0211.1

ChIP-seq Centrality
log(P-value): -36573.9

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0211.1

ChIP-seq Centrality
log(P-value): -36690.8

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: