Detailed information of matrix profile MA0730.1

Profile summary

Name: RARA(var.2)
Matrix ID: MA0730.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 15019979
Uniprot ID: P10276  
Pazar TF: TF0000449
TFBSshape ID:
TFencyclopedia IDs: 337
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

A [ 10 22 1131 35 4 1 7 228 502 223 581 2 21 1143 71 2 0 ]
C [ 25 26 13 1440 1455 269 348 198 157 584 84 11 9 17 1451 1488 313 ]
G [ 3 1923 11 7 0 16 17 118 677 432 397 16 1980 11 2 0 24 ]
T [ 1486 4 8 1 2 1126 1015 972 147 213 301 1391 10 6 0 0 1089 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

No TFBSshape profile for this model.