Detailed information of matrix profile MA0648.1

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Profile summary
Name: GSC
Matrix ID: MA0648.1
Class: Homeo domain factors
Family: Paired-related HD factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585359
Uniprot ID: P56915  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 2168 1115 1099 787 6081 0 89 6081 1688 882 ]
C [ 619 1732 828 452 144 0 176 0 553 2039 ]
G [ 2197 2398 6081 6081 25 0 71 54 2885 1912 ]
T [ 1097 836 315 416 0 6081 6081 0 955 1249 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0648.1 MA0648 1 GSC Homo sapiens
Paired-related HD factors Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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GC Content: