Detailed information of matrix profile MA0629.1

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Profile summary
Name: Rhox11
Matrix ID: MA0629.1
Class: Homeo domain factors
Family: Paired-related HD factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: Q810N8  
Pazar TF:
TFBSshape ID:
TFencyclopedia IDs:
Source:
Comment: Data is from Uniprobe database. Promoted from JASPAR PH0157.1 based on new evidence from Weirauch PBM (2014)

Sequence logo

Frequency matrix

         
A [ 54 33 17 30 13 3 9 1 4 1 56 78 52 31 24 31 41 ]
C [ 13 28 11 28 56 1 76 0 0 1 0 4 10 11 36 16 13 ]
G [ 15 23 38 23 6 95 15 1 94 0 0 3 1 33 28 43 10 ]
T [ 18 17 33 19 25 1 0 99 2 99 43 15 36 24 12 10 35 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

External links

              
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0629.1 MA0629 1 Rhox11 Mus musculus
Paired-related HD factors Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

Included Models:

GC Content: