Detailed information of matrix profile MA0575.1

  1. Home
  2. Matrix > MA0575.1

Profile summary
Name: F3A4.140
Matrix ID: MA0575.1
Class: Tryptophan cluster factors
Family: Myb/SANT domain factors
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: SELEX
Validation: 9628022
Uniprot ID: Q9SN12  
Pazar TF:
TFBSshape ID:
TFencyclopedia IDs:
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 33 57 27 6 9 68 0 50 0 0 0 68 3 ]
C [ 30 17 9 30 6 3 100 0 0 0 0 3 55 ]
G [ 20 17 37 20 82 23 0 50 100 0 0 26 30 ]
T [ 17 9 27 44 3 6 0 0 0 100 100 3 12 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

No TFBSshape profile for this model.

External links

         
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0575.1 MA0575 1 F3A4.140 Arabidopsis thaliana
Myb/SANT domain factors Tryptophan cluster factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: