Detailed information of matrix profile MA0563.1

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Profile summary
Name: SEP3
Matrix ID: MA0563.1
Class: MADS box factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-seq
Validation: 19033361
Uniprot ID: O22456  
Pazar TF:
TFBSshape ID: 361
TFencyclopedia IDs:
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 24 19 1 77 12 19 0 9 11 9 0 ]
C [ 37 111 97 0 28 0 0 0 3 0 7 ]
G [ 29 5 1 0 5 5 0 24 22 138 114 ]
T [ 60 15 51 73 105 126 150 117 114 3 29 ]

Binding sites information

   

TFBS profiles

External links

         
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0563.1 MA0563 1 SEP3 Arabidopsis thaliana
MADS box factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: